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2008

Original Research Articles

Gao M, Liu J, Bi D, Zhang Z, Cheng F, Chen S, Zhang Y

MEKK1, MKK1/MKK2 and MPK4 function together in a mitogen-activated protein kinase cascade to regulate innate immunity in plants

Cell research doi: 10.1038/cr.2008.300. 2008 December Article

Ohlson MB, Huang Z, Alto NM, Blanc MP, Dixon JE, Chai J, and Miller SI

Structure and Function of Salmonella SifA Indicate that Its Interactions with SKIP, SseJ, and RhoA Family GTPases Induce Endosomal Tubulation

Cell Host & Microbe, DOI: 10.1016/j.chom.2008.08.012; 2008 Nov. 13 Article

Huang Z, Feng Y, Chen D, Wu X, Huang S, Wang X, Xiao X, Li W, Huang N, Gu L, Zhong G, and Chai J

Structural Basis for Activation and Inhibition of the Secreted Chlamydia Protease CPAF

Cell Host & Microbe, DOI 10.1016/j.chom.2008.10.005; 2008 Dec. 11 Article

Meyers BC, Axtell MJ , Bartel B, Bartel DP, Baulcombe D, Bowman JL, Cao X, Carrington JC, Chen X, Green PJ, Griffiths-Jones S, Jacobsen SE, Mallory AC, Martienssen RA, Poethig RS, Qi Y, Vaucheret H, Voinnet O, Watanabe Y, Weigel D, and Zhui JK
Criteria for Annotation of Plant MicroRNAs

Plant Cell, doi/10.1105/tpc.108.064311; Published on 2008 Dec. 12. Article

Zhao T, Wang W, Bai X and Qi Y

Gene silencing by artificial microRNAs in Chlamydomonas

The Plant Journal, doi: 10.1111/j.1365-313X.2008.03758.x, 2008 Nov. 28.Article

Chang G, Liu S, Wang F, Zhang Y, Kou Z, Chen D, Gao S

Differential methylation status of imprinted genes in nuclear transfer derived ES (NT-ES) cells

Genomics, 2008 Nov. 12. [Epub ahead of print] doi:10.1016/j.ygeno.2008.09.011 Article

Wang S, Hu J, Guo X , Liu J and Gao S

ADP-Ribosylation Factor 1 Regulates Asymmetric Cell Division in Female Meiosis in the Mouse

Biology of Reproduction, DOI:10.1095/biolreprod.108.073197; Published on November 12, 2008 Article

Zhu Y, Li H, Hu L, Wang J, Zhou Y, Pang Z, Liu L and Shao F

Structure of a Shigella effector reveals a new class of ubiquitin ligases

Nature Structural & Molecular Biology, doi:10.1038/nsmb.1517; published online 9 November 2008 Article

Cao Y, Dai Y, Cui S, and Ma L

Histone H2B Monoubiquitination in the Chromatin of FLOWERING LOCUS CRegulates Flowering Time in Arabidopsis

The Plant Cell, 2008 Oct. 10. [Epub ahead of print] Article


Yin B, Guo L, Zhang D, Terzaghi W, Wang X, Liu T, He H, Cheng Z and Deng XW

Integration of Cytological Features with Molecular and Epigenetic Properties of Rice Chromosome 4

Molecular Plant, 2008 1: 816-829; doi:10.1093/mp/ssn037. Epub 2008 Aug 8Article

Zhang H, He H, Chen L, Li L, Liang M, Wang X, Liu X, He G, Chen R, Ma L and Deng XW

A Genome-Wide Transcription Analysis Reveals a Close Correlation of Promoter INDEL Polymorphism and Heterotic Gene Expression in Rice Hybrids

Molecular Plant, 2008 1: 720-731; doi:10.1093/mp/ssn022. Epub 2008 Aug 5Article

Zhu D, Maier A, Lee JH, Laubinger S, Saijo Y, Wang H, Qu LJ, Hoecker U, and Deng XW

Biochemical Characterization of Arabidopsis Complexes Containing CONSTITUTIVELY PHOTOMORPHOGENIC1 and SUPPRESSOR OF PHYA Proteins in Light Control of Plant Development

The Plant Cell, 2008 September 23. [Epub ahead of print] Article

Lin G, Xu N, Xi R

Paracrine Wingless signalling controls self-renewal of Drosophila intestinal stem cells

Nature , 2008 September 21. [Epub ahead of print] Article

Lv S, Liu S, He W, Duan C, Li Y, Liu Z, Zhang Y, Hao T, Wang Y, Li D, Wang C, and Gao S

Bioreactor Cultivation Enhances NTEB Formation and Differentiation of NTES Cells into Cardiomyocytes

CLONING AND STEM CELLS, DOI:10.1089/clo.2007.0093 Volume 10, 2008 Sep.1. Article

Zhou C, Rao Yong, Rao Y

A subset of octopaminergic neurons are important for Drosophila aggression

Nature Neuroscience, 2008 August 1. [Epub ahead of print] Article

Zhang Y, Feng S, Chen F, Chen H, Wang J, McCall C, Xiong Y, Deng XW

Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR 1 Forms a Nuclear E3 Ubiquitin Ligase with DDB1 and CUL4 That Is Involved in Multiple Plant Developmental Processes

The Plant Cell, 2008 June 13. [Epub ahead of print] Article

Guo L, Zhou J, Elling AA, Charron JF, Deng XW.

Histone Modifications and Expression of Light Regulated Genes in Arabidopsis Are Cooperatively Influenced by Changing Light Conditions

Plant Physiology, 2008 June 11. [Epub ahead of print] Article

Liu Y, Wang F, Zhang H, He H, Ma L, Deng XW.

Functional characterization of the Arabidopsis ubiquitin-specific protease gene family reveals specific role and redundancy of individual members in development.

Plant Journal, 2008 May 14. [Epub ahead of print] Article

Yan Z, Tan J, Qin C, Lu Y, Ding C, Luo M.

Precise Circuitry Links Bilaterally Symmetric Olfactory Maps.

Neuron. 58, 613–624, May 22, 2008 Article

Zhao R, Xuan Y, Li X, Xi R.

Age-related changes of germline stem cell activity, niche signaling activity and egg production in Drosophila.

Aging Cell. 2008 Mar 24; Epub ahead of print. Article

Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni H, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y,

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5Terminal Nucleotide.

Cell. 133, 1–12, April 4, 2008 Article

Chen H, Zou Y, Shang Y, Lin H, Wang Y, Cai R, Tang X, and Zhou JM

Firefly Luciferase Complementation Imaging Assay for Protein-Protein Interactions in Plants

Plant Physiology, February 2008, Vol. 146 Article

Cai Q, Sun Y, Huang X, Guo C, Zhang Y, Zhu Z, Zhang H.

The C. elegans PcG-like gene sop-2 regulates the temporal and sexual specificities of cell fates.

Genetics. 2008 Feb 3 [Epub ahead of print] Article

Lu Q, Zhang Y, Hu T, Guo P, Li W, Wang X.

C. elegans Rab GTPase 2 is required for the degradation of apoptotic cells.

Development 135, 1069-1080 (2008); Epub 2008 Feb. 6. Article

Li X, Wang X, He K, Ma Y, Su N, He H, Stolc V, Tongprasit W, Jin W, Jiang J, Terzaghi W, Li S, Deng XW.

High-Resolution Mapping of Epigenetic Modifications of the Rice Genome Uncovers Interplay between DNA Methylation, Histone Methylation, and Gene Expression.

Plant Cell. Epub 2008 Feb 8. Article

Feng S, Martinez C, Gusmaroli G, Wang Y, Zhou J, Wang F, Chen L, Yu L, Iglesias-Pedraz JM, Kircher S, Schäfer E, Fu X, Fan LM, Deng XW.

Coordinated regulation of Arabidopsis thaliana development by light and gibberellins.

Nature. 2008 Jan 24; 451(7177):475-9. Article

Xiang T, Zong N, Zou Y, Wu Y, Zhang J, Xing W, Li Y, Tang X, Zhu L, Chai J, and Zhou JM.

Pseudomonas syringae Effector AvrPto Blocks Innate Immunity by Targeting Receptor Kinases.

Current Biology. 2008 Jan 8; 18(1):74-80. Epub 2007 Dec 27. Article

Chen L, Wang H, Zhang J, Gu L, Huang N, Zhou JM, Chai J.

Structural basis for the catalytic mechanism of phosphothreonine lyase.

Nat Struct Mol Biol. 2008 Jan; 15(1):101-2. Epub 2007 Dec 16. Article

Bian X, Yanagawa Y, Chen WR, Luo M.

Cortical-like Functional Organization of the Pheromone-processing Circuits in the Medial Amygdala.

J Neurophysiol. 2008 Jan; 99(1):77-86. Epub 2007 Oct 31. Article

Reviews:

Jian-Min Zhou and Jijie Chai

Plant pathogenic bacterial type III effectors subdue host responses

Current Opinion in Microbiology. 2008 March 26; Epub ahead of print. Article

Shao F.

Biochemical functions of Yersinia type III effectors

Current Opinion in Microbiology. 2008 Feb 23; Epub ahead of print. Article

Books:

Karplus V, Deng XW.

Agricultural Biotechnology in China: Origins and Prospects. Springer; 2008.