SeuratExplorer

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Choose A Seurat .rds file:

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Metadata of Cells

Dimensional Reduction Plot

Settings

Change Cluster Order

Show cluster label

Label Size:

Point Size

Adjust H/W Ratio of DimPlot

Features on Dimensional Reduction Plot

Settings

Gene Symbol:

Show Cluster Label

Label Size:

Pick Color for lowest expression:

Pick Color for highest expression:

Point Size:

Adjust Height/Width Ratio:

Features Violin Plot

Settings

Gene Symbols:

Change Cluster Order

Split Plot

Stack Plot

Flip Plot

Color By:

Point Size:

Point Alpha:

x Axis Label Size:

Y Axis Label Size:

Adjust Height/Width Ratio:

Features Dot Plot

Settings

Gene Symbols:

Change Cluster Order

Cluster Idents

Rotate Axis

Flip Coordinate

Pick Color for lowest expression:

Pick Color for highest expression:

Dot Scale:

x Axis Label Size:

Y Axis Label Size:

Adjust Height/Width Ratio:

Features Heatmap Plot

Settings

Gene Symbols:

Change Cluster Order

Cluster Text Size:

Cluster Text Hjust:

Cluster Text Vjust:

Cluster Text Rotate Angle:

Cluster Group Bar Height:

Line Width:

Feature Text Size:

Adjust Height/Width Ratio:

Features Heatmap by Averaged Expression

Settings

Gene Symbols:

Change Cluster Order

Cluster Text Size:

Cluster Text Rotate Angle:

Feature Text Size:

Cluster Clusters

Cluster Features

Adjust Height/Width Ratio:

Features Ridge Plot

Settings

Gene Symbols:

Change Cluster Order

Number of columns:

Stack Plot

Color By:

x Axis Label Size:

Y Axis Label Size:

Adjust Height/Width Ratio:

Cell Percentage Plot

Settings

Change Order

select color plate:

Rotate X Axis

Column width:

Flow alpha:

Flow curve:

Adjust Height/Width Ratio:

Optional, Modify if if you want to subset cells, otherwise ignore it.

Logfc Threshold:

Test use:

Minimum Expression Percentage:

Minimum Expression Percentage Difference:

Analysis Results:

Step1: Common Settings

UMI percentage cutoff(%):

Top:

Analysis Results:

Settings

Input Gene Symbols:

Gene Short Summary:

Step1: Common Settings

Correlation Method:

Input a gene:

Input a group of genes: