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Choose A rds or qs2 file of Seurat Object:

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Metadata of Cells

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Dimensional Reduction Plot

Settings

Change Cluster Order

Show cluster label

Label Size:

Point Size

Adjust H/W Ratio of DimPlot

Features on Dimensional Reduction Plot

Settings

Gene Symbol:

Show Cluster Label

Label Size:

Pick Color for lowest expression:

Pick Color for highest expression:

Point Alpha:

Minimum expression cutoff by quantile:

Maximum expression cutoff by quantile::

Point Size:

Adjust Height/Width Ratio:

Features Violin Plot

Settings

Gene Symbols:

Change Cluster Order

Split Plot

Stack Plot

Flip Plot

Color By:

Point Size:

Point Alpha:

x Axis Label Size:

Y Axis Label Size:

Adjust Height/Width Ratio:

Features Dot Plot

Settings

Gene Symbols:

Change Cluster Order

Cluster Idents

Rotate Axis

Flip Coordinate

Pick Color for lowest expression:

Pick Color for highest expression:

Dot Scale:

x Axis Label Size:

Y Axis Label Size:

Adjust Height/Width Ratio:

Features Heatmap Plot

Settings

Gene Symbols:

Change Cluster Order

Cluster Text Size:

Cluster Text Hjust:

Cluster Text Vjust:

Cluster Text Rotate Angle:

Cluster Group Bar Height:

Line Width:

Feature Text Size:

Adjust Height/Width Ratio:

Features Heatmap by Averaged Expression

Settings

Gene Symbols:

Change Cluster Order

Cluster Text Size:

Cluster Text Rotate Angle:

Feature Text Size:

Cluster Clusters

Cluster Features

Adjust Height/Width Ratio:

Features Ridge Plot

Settings

Gene Symbols:

Change Cluster Order

Number of columns:

Stack Plot

Color By:

x Axis Label Size:

Y Axis Label Size:

Adjust Height/Width Ratio:

Cell Percentage Plot

Settings

Change Order

select color plate:

Rotate X Axis

Column width:

Flow alpha:

Flow curve:

Adjust Height/Width Ratio:

Step 1: Filter Cells (Optional)

Modify parameters bellow if you want to filter cells before the comparison, otherwise ignore it.

Only the selected cells will be kept for Step2, and all cells will be kept by default.

Step 2: Set the comparision

Logfc Threshold:

Test use:

Minimum Expression Percentage:

Minimum Expression Percentage Difference:

Analysis Results:

External Links:

Choose Species:

Choose Feature Types:

Step1: Common Settings

UMI percentage cutoff(%):

Top n:

Analysis Results:

Settings

Input Gene Symbols:

Gene Short Summary:

Step1: Common Settings

Correlation Method:

Input a gene:

Input a group of genes: